There have been a good number of discussions on these forums about electric trolling motor applications, associated battery placement locations, battery sizes (wieght vs output return) cable sizes, solar or land based chargers and the like.
I found a somewhat complete appearing FAQ on batteries (types, charging systems, discharge and cycle rates) to answer questions that someone may still have. It's a lot of reading, but it at least appears pretty complete. http://www.windsun.com/Batteries/Battery_FAQ.htm
Also, while researching solar chargers, I found them often on sites that also offered wind generators, and started wondering if anyone has ever hung a small wind generator on their mast to accomplish the same thing (battery charging) as intended by solar panels. That thought caused me to do some additional googling in another direction.
For anyone else interested in "thinking" about this, I did find a source for small mini-wind generators that look like they could sit on a mast without tipping the boat over at: http://www.usawindgen.com/125.html ($75-$125 for 50-150 watt systems) There would obviously be some mechanical issues with getting it onto the mast-top for non-sailing charging and down for sailing (or would you need to bring it down?). Maybe it rides up the sail slot on some jdoorly conceived bracket using the main halyard? At this point this is all conceptual anyway, but dollar for watt, the wind generator seems about 1/2 (or less) as expensive as a solar panel and works 24 hrs/day sunny or cloudy as long as the wind is blowing. Just a thought for commentary or discussion. Anybody ever seen one on a moored sailboat?